Report of the SNOMS Project 2006 to 2012, SNOMS SWIRE NOCS Ocean Monitoring System. Part 1: Narrative description

The ocean plays a major role in controlling the concentration of carbon dioxide (CO2) in the atmosphere. Increasing concentrations of CO2 in the atmosphere are a threat to the stability of the earth’s climate. A better understanding of the controlling role of the ocean will improve predictions of likely future changes in climate and the impact of the uptake of CO2 itself on marine eco-systems caused by the associated acidification of the ocean waters. The SNOMS Project (SWIRE NOCS Ocean Monitoring System) is a ground breaking joint research project supported by the Swire Group Trust, the Swire Educational Trust, the China Navigation Company (CNCo) and the Natural Environment Research Council. It collects high quality data on concentrations of CO2 in the surface layer of the ocean. It contributes to the international effort to better quantify (and understand the driving processes controlling) the exchanges of CO2 between the ocean and the atmosphere. In 2006 and 2007 a system that could be used on a commercial ship to provide data over periods of several months with only limited maintenance by the ships crew was designed and assembled by NOCS. The system was fitted to the CNCo ship the MV Pacific Celebes in May 2007. The onboard system was supported by web pages that monitored the progress of the ship and the functioning of the data collection system. To support the flow of data from the ship to the archiving of the data at the Carbon Dioxide Information Analysis Center (CDIAC in the USA) data processing procedures were developed for the quality control and systematic handling of the data. Data from samples of seawater collected by the ships crew and analysed in NOC (730 samples) have been used to confirm the consistency of the data from the automated measurement system on the ship. To examine the data collected between 2007 and 2012 the movements of the ship are divided into 16 voyages. Initially The Celebes traded on a route circum-navigating the globe via the Panama and Suez Canals. In 2009 the route shifted to one between Australia and New Zealand to USA and Canada. Analysis of the data is an on going process. It has demonstrated that the system produces reliable data. Data are capable of improving existing estimates of seasonal variability. The work has improved knowledge of gas exchange processes. Data from the crew-collected-samples are helping improve our ability to estimate alkalinity in different areas. This helps with the study of ocean acidification. Data from the 9 round trips in the Pacific are currently being examined along with data made available by the NOAA-PMEL laboratory forming time series from 2004 to 2012. The data from the Pacific route are of considerable interest. One reason is that the data monitors variations in the fluxes of CO2 associated with the current that flows westwards along the equator. This is one of the major natural sources of CO2 from the ocean into the atmosphere

5 years of plankton monitoring in Southampton Water and the Solent including FerryBox, Dock Monitor and discrete sample data

The Environment Agency (EA) has to make a eutrophication status assessment of the Solent and its harbours every four years. This requires a review of the frequency and magnitude of phytoplankton blooms. To assist with this process SOC has prepared this report to provide a "meta-data base" describing the relevant data sets collected by SOC between 1999 and 2003. It provides details of :- (1) methods used to collect the data (2) errors associated with the methods (3) calibration and quality control procedures used (4) changes in procedures (5) references to technical reports and theses containing detailed descriptions of the methods used. Changes in concentrations of chlorophyll in relation to concentrations of nutrients at SOC study sites in Southampton Water are plotted in graphs. The occurrence of bloom events and processes of bloom limitation are described. In particular observations of the variation of chlorophyll concentrations made using the FerryBox route between Town Quay Southampton and Cowes Isle of Wight are described and the development of the systems and associated problems are detailed. The information is presented as (i) graphs of the whole data set at all locations against time for each year (ii) 3D maps of the variation in concentrations with location and time (iii) time series for single locations along the FerryBox track

Links between surface productivity and deep ocean particle flux at the Porcupine Abyssal Plain sustained observatory

In this study we present hydrography, biogeochemistry and sediment trap observations between 2003 and 2012 at Porcupine Abyssal Plain (PAP) sustained observatory in the Northeast Atlantic. The time series is valuable as it allows for investigation of the link between surface productivity and deep ocean carbon flux. The region is a perennial sink for CO2, with an average uptake of around 1.5 mmol m?2 day?1. The average monthly drawdowns of inorganic carbon and nitrogen were used to quantify the net community production (NCP) and new production. Seasonal NCP and new production were found to be 4.57 ± 0.85 mol C m?2 and 0.37 ± 0.14 mol N m?2, respectively. The C : N ratio was high (12) compared to the Redfield ratio (6.6), and the production calculated from carbon was higher than production calculated from nitrogen, which is indicative of carbon overconsumption. The export ratio and transfer efficiency were 16 and 4 %, respectively, and the site thereby showed high flux attenuation. Particle tracking was used to examine the source region of material in the sediment trap, and there was large variation in source regions, both between and within years. There were higher correlations between surface productivity and export flux when using the particle-tracking approach, than by comparing with the mean productivity in a 100 km box around the PAP site. However, the differences in correlation coefficients were not significant, and a longer time series is needed to draw conclusions on applying particle tracking in sediment trap analyses

Air–sea CO2 exchange and ocean acidification in UK seas and adjacent waters

Ongoing anthropogenic emissions of carbon dioxide (CO2) into the atmosphere are driving a net flux of CO2 into the ocean globally, resulting in a decline in pH called ‘ocean acidification’. Here, we discuss the consequences of this for the seas surrounding the UK from a chemical perspective, focussing on studies published since the previous MCCIP review of ocean acidification research (Williamson et al., 2017). In this reporting cycle, the biological, ecological, and socio-economic impacts of ocean acidification are considered in more detail in separate accompanying MCCIP reviews The atmospheric CO2 concentration continues to increase due to human activities (Le Quéré et al., 2018), increasing the net flux of CO2 into the global ocean, including the North Atlantic and UK continental shelf seas. Such CO2 uptake has the desirable effect of reducing the rate of climate change, but the undesirable result of ocean acidification. Our understanding of the factors that drive high spatial and temporal variability in air-sea CO2 fluxes and seawater pH in UK waters has continued to improve, thanks to observational campaigns both across the entire North-West European continental shelf sea and at specific time–series sites. Key challenges for the future include sustaining time–series observations of near-surface marine carbonate system variables, and of the auxiliary parameters required for their interpretation (e.g. temperature, salinity, and nutrients); developing and deploying new sensor technology for full water-column profiles and pore waters in seafloor sediments; and increasing the spatial and temporal resolution of models sufficiently to capture the complex processes that dominate the marine carbonate system in coastal and shelf sea environments, along with improving how those processes are themselves simulated

Carbon exchange between a shelf sea and the ocean: The Hebrides Shelf, west of Scotland

Global mass balance calculations indicate the majority of particulate organic carbon (POC) exported from shelf seas is transferred via downslope exchange processes. Here we demonstrate the downslope flux of POC from the Hebrides Shelf is approximately 3-to-5-fold larger per unit length/area than the global mean. To reach this conclusion we quantified the offshore transport of particulate and dissolved carbon fractions via the “Ekman Drain”, a strong downwelling feature of the NW European Shelf circulation, and subsequently compared these fluxes to simultaneous regional air-sea CO2 fluxes and on-shore wind-driven Ekman fluxes to constrain the carbon dynamics of this shelf. Along the shelf break we estimate a mean offshelf total carbon (dissolved?+?particulate) flux of 4.2 tonnes C m?1 d?1 compared to an onshelf flux of 4.5 tonnes C m?1 d?1. Organic carbon represented 3.3% of the onshelf carbon flux but 6.4% of the offshelf flux indicating net organic carbon export. Dissolved organic carbon represented 95% and POC 5% of the exported organic carbon pool. When scaled along the shelf break the total offshelf POC flux (0.007 Tg C d?1) was found to be three times larger than the regional air-sea CO2 ingassing flux (0.0021 Tg C d?1), an order of magnitude larger than the particulate inorganic carbon flux (0.0003 Tg C d?1) but far smaller than the DIC (2.03 Tg C d?1) or DOC (0.13 Tg C d?1) fluxes. Significant spatial heterogeneity in the Ekman drain transport confirms that offshelf carbon fluxes via this mechanism are also spatially heterogeneous. This article is protected by copyright. All rights reserved

The spiritual revolution and suicidal ideation: an empirical enquiry among 13- to 15-year-old adolescents in England and Wales

The association between conventional religiosity and suicide inhibition has been well explored and documented since the pioneering work of Durkheim. Commentators like Heelas and Woodhead point to ways in which conventional religiosity is giving way in England and Wales to a range of alternative spiritualities, including renewed interest in paranormal phenomena. Taking a sample of 3095 13- to 15-year-old adolescents, the present study examines the association between suicidal ideation and both conventional religiosity and paranormal beliefs, after controlling for individual differences in sex, age and personality (extraversion, neuroticism and psychoticism). The data demonstrate that, while conventional religiosity is slightly associated with lower levels of suicidal ideation, paranormal beliefs are strongly associated with higher levels of suicidal ideation

Pulsars and Their Nebulae as EGRET Sources

At the end of the EGRET mission, only 6-8 Galactic sources had been identified as young pulsars. Since then, several energetic pulsars have been discovered in EGRET error boxes along the Galactic plane, as well as several pulsar wind nebulae from which pulsations have not yet been discovered. Some of these nebulae are associated with moderately variable EGRET sources, suggesting that the gamma-ray emission might be coming from the nebula rather than from the pulsar magnetosphere. There is also a population of unidentified EGRET sources at mid-Galactic latitudes which have been proposed to be either nearby middle-aged pulsars or millisecond pulsars. I review the current status of observational studies of pulsars associated with EGRET sources and what they suggest the upcoming AGILE and GLAST gamma-ray missions might observe.Comment: 11 pages, proceedings of talk given at "Young Neutron Stars and Supernova Remnants" session of 35th COSPAR meeting held in Paris, France. To appear in Advances in Space Researc

FGF receptor genes and breast cancer susceptibility: results from the Breast Cancer Association Consortium

Background:Breast cancer is one of the most common malignancies in women. Genome-wide association studies have identified FGFR2 as a breast cancer susceptibility gene. Common variation in other fibroblast growth factor (FGF) receptors might also modify risk. We tested this hypothesis by studying genotyped single-nucleotide polymorphisms (SNPs) and imputed SNPs in FGFR1, FGFR3, FGFR4 and FGFRL1 in the Breast Cancer Association Consortium. Methods:Data were combined from 49 studies, including 53 835 cases and 50 156 controls, of which 89 050 (46 450 cases and 42 600 controls) were of European ancestry, 12 893 (6269 cases and 6624 controls) of Asian and 2048 (1116 cases and 932 controls) of African ancestry. Associations with risk of breast cancer, overall and by disease sub-type, were assessed using unconditional logistic regression. Results:Little evidence of association with breast cancer risk was observed for SNPs in the FGF receptor genes. The strongest evidence in European women was for rs743682 in FGFR3; the estimated per-allele odds ratio was 1.05 (95 confidence interval=1.02-1.09, P=0.0020), which is substantially lower than that observed for SNPs in FGFR2. Conclusion:Our results suggest that common variants in the other FGF receptors are not associated with risk of breast cancer to the degree observed for FGFR2. © 2014 Cancer Research UK

Meta-analysis of genome-wide association studies of anxiety disorders.

Anxiety disorders (ADs), namely generalized AD, panic disorder and phobias, are common, etiologically complex conditions with a partially genetic basis. Despite differing on diagnostic definitions based on clinical presentation, ADs likely represent various expressions of an underlying common diathesis of abnormal regulation of basic threat-response systems. We conducted genome-wide association analyses in nine samples of European ancestry from seven large, independent studies. To identify genetic variants contributing to genetic susceptibility shared across interview-generated DSM-based ADs, we applied two phenotypic approaches: (1) comparisons between categorical AD cases and supernormal controls, and (2) quantitative phenotypic factor scores (FS) derived from a multivariate analysis combining information across the clinical phenotypes. We used logistic and linear regression, respectively, to analyze the association between these phenotypes and genome-wide single nucleotide polymorphisms. Meta-analysis for each phenotype combined results across the nine samples for over 18 000 unrelated individuals. Each meta-analysis identified a different genome-wide significant region, with the following markers showing the strongest association: for case-control contrasts, rs1709393 located in an uncharacterized non-coding RNA locus on chromosomal band 3q12.3 (P=1.65 × 10(-8)); for FS, rs1067327 within CAMKMT encoding the calmodulin-lysine N-methyltransferase on chromosomal band 2p21 (P=2.86 × 10(-9)). Independent replication and further exploration of these findings are needed to more fully understand the role of these variants in risk and expression of ADs.Molecular Psychiatry advance online publication, 12 January 2016; doi:10.1038/mp.2015.197

Seasonality and spatial heterogeneity of the surface ocean carbonate system in the northwest European continental shelf

In 2014–5 the UK NERC sponsored an 18 month long Shelf Sea Biogeochemistry research programme which collected over 1500 nutrient and carbonate system samples across the NW European Continental shelf, one of the largest continental shelves on the planet. This involved the cooperation of 10 different Institutes and Universities, using 6 different vessels. Additional carbon dioxide (CO2) data were obtained from the underway systems on three of the research vessels. Here, we present and discuss these data across 9 ecohydrodynamic regions, adapted from those used by the EU Marine Strategy Framework Directive (MSFD). We observed strong seasonal and regional variability in carbonate chemistry around the shelf in relation to nutrient biogeochemistry. Whilst salinity increased (and alkalinity decreased) out from the near-shore coastal waters offshore throughout the year nutrient concentrations varied with season. Spatial and seasonal variations in the ratio of DIC to nitrate concentration were seen that could impact carbon cycling. A decrease in nutrient concentrations and a pronounced under-saturation of surface pCO2 was evident in the spring in most regions, especially in the Celtic Sea. This decrease was less pronounced in Liverpool Bay and to the North of Scotland, where nutrient concentrations remained measurable throughout the year. The near-shore and relatively shallow ecosystems such as the eastern English Channel and southern North Sea were associated with a thermally driven increase in pCO2 to above atmospheric levels in summer and an associated decrease in pH. Non-thermal processes (such as mixing and the remineralisation of organic material) dominated in winter in most regions but especially in the northwest of Scotland and in Liverpool Bay. The large database collected will improve understanding of carbonate chemistry over the North-Western European Shelf in relation to nutrient biogeochemistry, particularly in the context of climate change and ocean acidification